SGN Marker C2_At3g04710

SGN-M7614
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310091 (SGN)
129060 (CGN)		---
Solanum tuberosumSingleSGN-U250988---
ArabidopsisSingleAt3g04710 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38425)
Chromosome
1
Position
95.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39670
Forward primer (5'-3')
AGGGTGCAGATCCTGCAATACCCAG
Accessions and product sizes
Solanum lycopersicum TA209
1050
Solanum pennellii TA56
1050
Approximate temperature
55°C
Reverse primer (5'-3')
TCCAGCCTCACTTTGTAAATCAACATC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
350+700
Solanum pennellii TA56
1050
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26038)
Chromosome
3
Position
1.28 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10953
Forward primer (5'-3')
AGGGTGCAGATCCTGCAATACCCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGCCTCACTTTGTAAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1300
 Approximate temperature
55°C
  
PCR data   Exp. ID 10954
Forward primer (5'-3')
AGGGTGCAGATCCTGCAATACCCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGCCTCACTTTGTAAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1300
 Approximate temperature
55°C
  
PCR data   Exp. ID 10955
Forward primer (5'-3')
AGGGTGCAGATCCTGCAATACCCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGCCTCACTTTGTAAATCAACATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1300
 Approximate temperature
55°C
  
PCR data   Exp. ID 10956
Forward primer (5'-3')
AGGGTGCAGATCCTGCAATACCCAG
Digested band sizes (using DraI)
Solanum pennellii LA716: 1300
Solanum lycopersicum LA925: 1150
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAGCCTCACTTTGTAAATCAACATC
Enzymes
All possible enzymes for pennellii and and lycopersicum: BanII,BsiEI,BsiHKAI,DraI,HaeIII,RsaI,SacI,SsPI,TaqI,XcmI
   
Accessions and product sizes
Solanum pennellii LA716: 1300
Solanum lycopersicum LA925: 1300
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U271964
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At3g04710F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At3g04710F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g04710  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7614 marker 7614
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