SGN Marker C2_At3g05000

SGN-M7621
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303044 (SGN)
125096 (CGN)
---
Capsicum annuumSingleSGN-U197208---
Lycopersicon CombinedMultipleSGN-U216520---
Solanum tuberosumSingleSGN-U249651---
ArabidopsisSingleAt3g05000 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26046)
Chromosome
3
Position
1.39 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41338
Forward primer (5'-3')
TTCTTACTGCAATGGATTCTACGCC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TGCATATGAATTTGATAGCCTCCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At3g05000  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7621 marker 7621
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)