Sol Genomics Network

SGN Marker C2_At3g05070

SGN-M7622
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	309749 (SGN) 132036 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U205136	-	-	-
Lycopersicon Combined	Single	SGN-U230297	-	-	-
Solanum tuberosum	Single	SGN-U255751	-	-	-
Arabidopsis	Single	At3g05070 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 26047)
Chromosome 3
Position 1.42 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41339

Forward primer (5'-3')

ACCTGCCACATGACAAGCAGCTTC

Accessions and product sizes

Solanum pennellii TA56

400+450+1000

Solanum lycopersicum TA209

300

Approximate temperature

55°C

Reverse primer (5'-3')

TGTCAAGTTTCTTTTGCACATCCC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10966
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1000+450+400	Approximate temperature 55°C

PCR data Exp. ID 10967
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 300	Approximate temperature 55°C

PCR data Exp. ID 10968
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 300	Approximate temperature 55°C

PCR data Exp. ID 13134
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 250	Approximate temperature 55°C

PCR data Exp. ID 13135
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 250	Approximate temperature 55°C

PCR data Exp. ID 13136
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 250	Approximate temperature 55°C

PCR data Exp. ID 13137
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 13138
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 13139
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 13140
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C

PCR data Exp. ID 13141
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 310	Approximate temperature 55°C

PCR data Exp. ID 13142
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Physalis TA1367: 250	Approximate temperature 55°C

PCR data Exp. ID 13143
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 250	Approximate temperature 55°C

PCR data Exp. ID 13144
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 250	Approximate temperature 55°C

PCR data Exp. ID 13145
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 310	Approximate temperature 55°C

PCR data Exp. ID 13146
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Coffea canephora BP409: 250	Approximate temperature 55°C

PCR data Exp. ID 32990
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 310	Approximate temperature 55°C

PCR data Exp. ID 32991
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 32992
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 250	Approximate temperature 55°C

PCR data Exp. ID 32993
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 32994
Forward primer (5'-3') ACCTGCCACATGACAAGCAGCTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTCAAGTTTCTTTTGCACATCCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C