SGN Marker C2_At3g05210

SGN-M7623
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303584 (SGN)
123494 (CGN)		---
Lycopersicon CombinedSingleSGN-U220769---
ArabidopsisSingleAt3g05210 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26048)
Chromosome
3
Position
1.48 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41340
Forward primer (5'-3')
AGACTACTTGTATTTTCGGATAAGGG
Accessions and product sizes
Solanum lycopersicum TA209
2500
Solanum pennellii TA56
2500+750
Approximate temperature
55°C
Reverse primer (5'-3')
ATGTTGAGCCAAGAGTCACAACATCTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32341
Forward primer (5'-3')
AGACTACTTGTATTTTCGGATAAGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGTTGAGCCAAGAGTCACAACATCTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 530
 Approximate temperature
55°C
  
PCR data   Exp. ID 32342
Forward primer (5'-3')
AGACTACTTGTATTTTCGGATAAGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGTTGAGCCAAGAGTCACAACATCTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 800
 Approximate temperature
55°C
  
PCR data   Exp. ID 32343
Forward primer (5'-3')
AGACTACTTGTATTTTCGGATAAGGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATGTTGAGCCAAGAGTCACAACATCTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 800
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g05210  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7623 marker 7623
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