Sol Genomics Network

SGN Marker C2_At3g06730

SGN-M7640
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	311903 (SGN) 126724 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U218486	-	-	-
Arabidopsis	Single	At3g06730 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41403)
Chromosome 1
Position 191.40 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43379

Forward primer (5'-3')

ACAGATGATGAATACGAATTTGC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ATCATTTGTATCGGGATGAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38435)
Chromosome 1
Position 92.80 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39679

Forward primer (5'-3')

ACAGATGATGAATACGAATTTGC

Accessions and product sizes

Solanum pennellii TA56

350

Solanum lycopersicum TA209

350

Approximate temperature

55°C

Reverse primer (5'-3')

ATCATTTGTATCGGGATGAGC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

150

Solanum pennellii TA56

170

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26066)
Chromosome 3
Position 2.13 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10983
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 350	Approximate temperature 55°C

PCR data Exp. ID 10984
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 350	Approximate temperature 55°C

PCR data Exp. ID 10985
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 350	Approximate temperature 55°C

PCR data Exp. ID 13168
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 400	Approximate temperature 55°C

PCR data Exp. ID 13169
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 400	Approximate temperature 55°C

PCR data Exp. ID 13170
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Physalis TA1367: 380	Approximate temperature 55°C

PCR data Exp. ID 32629
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 400	Approximate temperature 55°C

PCR data Exp. ID 33002
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 400	Approximate temperature 55°C

PCR data Exp. ID 33003
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 400	Approximate temperature 55°C

PCR data Exp. ID 10986
Forward primer (5'-3') ACAGATGATGAATACGAATTTGC	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 150 Solanum pennellii LA716: 170	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCATTTGTATCGGGATGAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: HinfI
Accessions and product sizes Solanum pennellii LA716: 350 Solanum lycopersicum LA925: 350	Approximate temperature 55°C