SGN Marker C2_At3g07565

SGN-M7652
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310447 (SGN)
132375 (CGN)
---
Capsicum annuumSingleSGN-U198311---
Lycopersicon CombinedSingleSGN-U216313---
Solanum tuberosumMultipleSGN-U249866---
ArabidopsisSingleAt3g07565 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26078)
Chromosome
3
Position
2.41 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41348
Forward primer (5'-3')
TGGCGCCACCACTAATGGTCTCTC
Accessions and product sizes
Solanum lycopersicum TA209
420
Solanum pennellii TA56
420
Approximate temperature
55°C
Reverse primer (5'-3')
AGACATCCATCTACATCTCAATGCTAC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
100+290
Solanum lycopersicum TA209
400
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32351
Forward primer (5'-3')
TGGCGCCACCACTAATGGTCTCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGACATCCATCTACATCTCAATGCTAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 32352
Forward primer (5'-3')
TGGCGCCACCACTAATGGTCTCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGACATCCATCTACATCTCAATGCTAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 32353
Forward primer (5'-3')
TGGCGCCACCACTAATGGTCTCTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGACATCCATCTACATCTCAATGCTAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g07565  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7652 marker 7652
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