Sol Genomics Network

SGN Marker C2_At3g09740

SGN-M7676
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	302841 (SGN) 125153 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U201454	-	-	-
Lycopersicon Combined	Single	SGN-U217932	-	-	-
Solanum tuberosum	Single	SGN-U252967	-	-	-
Arabidopsis	Single	At3g09740 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49240)
Chromosome 10
Position 63.17 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47175)
Chromosome 10
Position 69.19 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Tomato-EXPEN 2000
Map version 52 (location: 38444)
Chromosome 10
Position 71.50 cM
Confidence F(LOD3)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39685

Forward primer (5'-3')

TCCGACATAGAAACTGCTCTTCAG

Accessions and product sizes

Solanum lycopersicum TA209

1250

Solanum pennellii TA56

1300

Approximate temperature

55°C

Reverse primer (5'-3')

AGTCCTCCGAATCTCAGCATTG

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

1300

Solanum lycopersicum TA209

1250

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26102)
Chromosome 3
Position 2.99 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10993
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 10994
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 10995
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 13171
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 220	Approximate temperature 55°C

PCR data Exp. ID 13172
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 220	Approximate temperature 55°C

PCR data Exp. ID 13173
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 220	Approximate temperature 55°C

PCR data Exp. ID 13174
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 220	Approximate temperature 55°C

PCR data Exp. ID 13175
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 220	Approximate temperature 55°C

PCR data Exp. ID 13176
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Physalis TA1367: 220	Approximate temperature 55°C

PCR data Exp. ID 13177
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 220	Approximate temperature 55°C

PCR data Exp. ID 13178
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 220	Approximate temperature 55°C

PCR data Exp. ID 32630
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 220	Approximate temperature 55°C

PCR data Exp. ID 33004
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 220	Approximate temperature 55°C

PCR data Exp. ID 33005
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 220	Approximate temperature 55°C

PCR data Exp. ID 33006
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 220	Approximate temperature 55°C

PCR data Exp. ID 33007
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 220	Approximate temperature 55°C

PCR data Exp. ID 10996
Forward primer (5'-3') TCCGACATAGAAACTGCTCTTCAG	Digested band sizes (using DraI) Solanum lycopersicum LA925: 100 Solanum pennellii LA716: 200	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTCCTCCGAATCTCAGCATTG	Enzymes All possible enzymes for pennellii and and lycopersicum: Dra
Accessions and product sizes Solanum lycopersicum LA925: 250 Solanum pennellii LA716: 250	Approximate temperature 55°C