SGN Marker C2_At3g10380

SGN-M7688
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U203455---
Lycopersicon CombinedSingleSGN-U219950---
ArabidopsisSingleAt3g10380 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26114)
Chromosome
3
Position
3.22 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41360
Forward primer (5'-3')
AGCAGCCATTACAGGTCTTCACTATC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
AGAAGTTCTCCAACAATAACATGGTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11004
Forward primer (5'-3')
ACCGTCTTACAGAGTGAATGCCAAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTCTGGAGTAGCTCGCAGGATCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 11005
Forward primer (5'-3')
ACCGTCTTACAGAGTGAATGCCAAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTCTGGAGTAGCTCGCAGGATCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 11006
Forward primer (5'-3')
ACCGTCTTACAGAGTGAATGCCAAC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTCTGGAGTAGCTCGCAGGATCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 100
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U219950
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g10380  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7688 marker 7688
User comments 
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