SGN Marker C2_At3g12290

SGN-M7713
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311444 (SGN)
127732 (CGN)
---
Lycopersicon CombinedSingleSGN-U217431---
ArabidopsisSingleAt3g12290 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38454)
Chromosome
10
Position
57.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39694
Forward primer (5'-3')
TCGGCAAGCTTGCAATGAAAGG
Accessions and product sizes
Solanum lycopersicum TA209
180
Solanum pennellii TA56
180
Approximate temperature
55°C
Reverse primer (5'-3')
TTGCTTCGACCAACCACAACTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26140)
Chromosome
3
Position
3.92 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11027
Forward primer (5'-3')
TCGGCAAGCTTGCAATGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTTCGACCAACCACAACTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 280
Approximate temperature
55°C
  
PCR data   Exp. ID 11028
Forward primer (5'-3')
TCGGCAAGCTTGCAATGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTTCGACCAACCACAACTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 280
Approximate temperature
55°C
  
PCR data   Exp. ID 11029
Forward primer (5'-3')
TCGGCAAGCTTGCAATGAAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTTCGACCAACCACAACTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 280
Approximate temperature
55°C
  
PCR data   Exp. ID 11030
Forward primer (5'-3')
TCGGCAAGCTTGCAATGAAAGG
Digested band sizes (using HinfI)
Solanum lycopersicum LA925: 280
Solanum pennellii LA716: 200
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTTCGACCAACCACAACTGC
Enzymes
All possible enzymes for pennellii and and lycopersicum: ApoI,HinfI,TaqI,Tsp509I
All possible enzymes for lycopersicum and pimpinellifolium: ApoI,Tsp509I
  
Accessions and product sizes
Solanum lycopersicum LA925: 280
Solanum pennellii LA716: 280
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g12290F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text

Genomic location of C2_At3g12290  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7713 marker 7713
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