SGN Marker C2_At3g12930

SGN-M7723
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308087 (SGN)
130467 (CGN)
---
Lycopersicon CombinedSingleSGN-U225371---
Solanum tuberosumMultipleSGN-U250277---
ArabidopsisSingleAt3g12930 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26150)
Chromosome
3
Position
4.13 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41377
Forward primer (5'-3')
AAGTGAGGAGATTGATGATGATGC
Accessions and product sizes
Solanum lycopersicum TA209
1350
Solanum pennellii TA56
1350
Approximate temperature
55°C
Reverse primer (5'-3')
AGCAATAATGAAAAACCGAGTCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
650
Solanum lycopersicum TA209
500
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11035
Forward primer (5'-3')
AAGTGAGGAGATTGATGATGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCAATAATGAAAAACCGAGTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 11036
Forward primer (5'-3')
AAGTGAGGAGATTGATGATGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCAATAATGAAAAACCGAGTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 11037
Forward primer (5'-3')
AAGTGAGGAGATTGATGATGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCAATAATGAAAAACCGAGTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g12930  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7723 marker 7723
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