SGN Marker C2_At3g13940

SGN-M7733
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple300505 (SGN)
121250 (CGN)
---
Capsicum annuumSingleSGN-U199651---
Lycopersicon CombinedSingleSGN-U217724---
Solanum tuberosumSingleSGN-U264500---
ArabidopsisSingleAt3g13940 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26161)
Chromosome
3
Position
4.60 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41381
Forward primer (5'-3')
TGCCAAGCAAGAACTCACTGCAGAAG
Accessions and product sizes
Solanum pennellii TA56
550+850
Solanum lycopersicum TA209
550+850
Approximate temperature
55°C
Reverse primer (5'-3')
TTGTAGGATCTGTTGCGAACAAAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11045
Forward primer (5'-3')
TGCCAAGCAAGAACTCACTGCAGAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTAGGATCTGTTGCGAACAAAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1400
Approximate temperature
55°C
  
PCR data   Exp. ID 11046
Forward primer (5'-3')
TGCCAAGCAAGAACTCACTGCAGAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTAGGATCTGTTGCGAACAAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 11047
Forward primer (5'-3')
TGCCAAGCAAGAACTCACTGCAGAAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TTGTAGGATCTGTTGCGAACAAAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g13940F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text

Genomic location of C2_At3g13940  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7733 marker 7733
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