Sol Genomics Network

SGN Marker C2_At3g14910

SGN-M7740
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301769 (SGN) 121213 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U198827	-	-	-
Lycopersicon Combined	Single	SGN-U223694	-	-	-
Arabidopsis	Single	At3g14910 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46665)
Chromosome 7
Position 12.20 cM
Confidence I(LOD2)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Pepper-COSII
Map version 58 (location: 41415)
Chromosome 7
Position 108.40 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43391

Forward primer (5'-3')

TCTCCGTGGTGATCTGATTCATAAAC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AATCTAAGAATCTTTCCAGGGCTTAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38467)
Chromosome 7
Position 61.00 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39707

Forward primer (5'-3')

TCTCCGTGGTGATCTGATTCATAAAC

Accessions and product sizes

Solanum lycopersicum TA209

200

Solanum pennellii TA56

200

Approximate temperature

53°C

Reverse primer (5'-3')

AATCTAAGAATCTTTCCAGGGCTTAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26168)
Chromosome 3
Position 5.02 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11048
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 700	Approximate temperature 55°C

PCR data Exp. ID 11049
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 700	Approximate temperature 55°C

PCR data Exp. ID 11050
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 700	Approximate temperature 55°C

PCR data Exp. ID 13198
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 700	Approximate temperature 55°C

PCR data Exp. ID 13199
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 750	Approximate temperature 55°C

PCR data Exp. ID 13200
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 700+1500	Approximate temperature 55°C

PCR data Exp. ID 13201
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 700	Approximate temperature 55°C

PCR data Exp. ID 13202
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 700	Approximate temperature 55°C

PCR data Exp. ID 13203
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 700	Approximate temperature 55°C

PCR data Exp. ID 13204
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 700	Approximate temperature 55°C

PCR data Exp. ID 13205
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 700	Approximate temperature 55°C

PCR data Exp. ID 13206
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Physalis TA1367: 550	Approximate temperature 55°C

PCR data Exp. ID 13207
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 700	Approximate temperature 55°C

PCR data Exp. ID 13208
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 700	Approximate temperature 55°C

PCR data Exp. ID 13209
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 750	Approximate temperature 55°C

PCR data Exp. ID 13210
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 700	Approximate temperature 55°C

PCR data Exp. ID 33017
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 700	Approximate temperature 55°C

PCR data Exp. ID 33018
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 700	Approximate temperature 55°C

PCR data Exp. ID 33019
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 700	Approximate temperature 55°C

PCR data Exp. ID 33020
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 700	Approximate temperature 55°C

PCR data Exp. ID 11051
Forward primer (5'-3') TCTCCGTGGTGATCTGATTCATAAAC	Digested band sizes (using AluI) Solanum lycopersicum LA925: 500 Solanum pennellii LA716: 350	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTAAGAATCTTTCCAGGGCTTAC	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI,HinfI
Accessions and product sizes Solanum pennellii LA716: 700 Solanum lycopersicum LA925: 700	Approximate temperature 55°C