Sol Genomics Network

SGN Marker C2_At3g17040

SGN-M7768
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Lycopersicon Combined	Single	SGN-U224982	-	-	-
Solanum tuberosum	Single	SGN-U250826	-	-	-
Arabidopsis	Single	At3g17040 on TAIR	-	-	-

Mapped locations

Map: Solanum michoacanum 2011
Map version 155 (location: 109235)
Chromosome 4
Position 30.46 cM
Confidence uncalculated
Protocol CAPS

Solanum michoacanum 2011

Map: Potato meta-QTL consensus map
Map version 107 (location: 51522)
Chromosome 4
Position 22.10 cM
Confidence uncalculated
Protocol unknown

Potato meta-QTL consensus map

Map: Tobacco N. acuminata
Map version 89 (location: 46486)
Chromosome 4
Position 12.90 cM
Confidence F(LOD3)
Protocol PCR

Tobacco N. acuminata

Map: Pepper-COSII
Map version 58 (location: 41419)
Chromosome 5
Position 36.80 cM
Confidence I(LOD2)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43395

Forward primer (5'-3')

TGGGGTTGGATGGAGTGGAAAG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AGTAGAGGTTACGAATTTCCTCTGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38477)
Chromosome 4
Position 22.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39716

Forward primer (5'-3')

TGGGGTTGGATGGAGTGGAAAG

Accessions and product sizes

Solanum lycopersicum TA209

750

Solanum pennellii TA56

750

Approximate temperature

55°C

Reverse primer (5'-3')

AGTAGAGGTTACGAATTTCCTCTGC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

400

Solanum lycopersicum TA209

750

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26198)
Chromosome 3
Position 5.81 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11079
Forward primer (5'-3') TGGGGTTGGATGGAGTGGAAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTAGAGGTTACGAATTTCCTCTGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 470	Approximate temperature 55°C

PCR data Exp. ID 11080
Forward primer (5'-3') TGGGGTTGGATGGAGTGGAAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTAGAGGTTACGAATTTCCTCTGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 470	Approximate temperature 55°C

PCR data Exp. ID 11081
Forward primer (5'-3') TGGGGTTGGATGGAGTGGAAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTAGAGGTTACGAATTTCCTCTGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 470	Approximate temperature 55°C

PCR data Exp. ID 11082
Forward primer (5'-3') TGGGGTTGGATGGAGTGGAAAG	Digested band sizes (using XbaI) Solanum pennellii LA716: 420 Solanum lycopersicum LA925: 470	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTAGAGGTTACGAATTTCCTCTGC	Enzymes All possible enzymes for pennellii and and lycopersicum: ApoI,Tsp509I,XbaI All possible enzymes for lycopersicum and pimpinellifolium: ApoI,BglII,BstYI,DpnII,Hpy188I,Tsp509I,XbaI
Accessions and product sizes Solanum pennellii LA716: 470 Solanum lycopersicum LA925: 470	Approximate temperature 55°C