SGN Marker C2_At3g18050

SGN-M7784
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303726 (SGN)
120166 (CGN)
---
Capsicum annuumSingleSGN-U205557---
Lycopersicon CombinedSingleSGN-U227296---
Solanum tuberosumSingleSGN-U248833---
ArabidopsisSingleAt3g18050 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26214)
Chromosome
3
Position
6.18 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41404
Forward primer (5'-3')
TGTCCCTCTACGTTTACTTCTTCTTCAC
Accessions and product sizes
Solanum lycopersicum TA209
700
Solanum pennellii TA56
700
Approximate temperature
55°C
Reverse primer (5'-3')
TTAGACCCATCAATTGGCAATCC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
250
Solanum pennellii TA56
350
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g18050  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7784 marker 7784
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