SGN Marker C2_At3g18165

SGN-M7785
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198813---
Lycopersicon CombinedSingleSGN-U216382---
Solanum tuberosumSingleSGN-U244783---
ArabidopsisSingleAt3g18165 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26215)
Chromosome
3
Position
6.22 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41405
Forward primer (5'-3')
ATGGCGACAAAAGACGGCGAC
Accessions and product sizes
Solanum lycopersicum TA209
2500
Approximate temperature
55°C
Reverse primer (5'-3')
TGATGCTGCAGTAATCGCTGAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11093
Forward primer (5'-3')
ATGGCGACAAAAGACGGCGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATGCTGCAGTAATCGCTGAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 600
Approximate temperature
55°C
  
PCR data   Exp. ID 11094
Forward primer (5'-3')
ATGGCGACAAAAGACGGCGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATGCTGCAGTAATCGCTGAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 600
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g18165F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text

Genomic location of C2_At3g18165  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7785 marker 7785
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)