SGN Marker C2_At3g21740

SGN-M7839
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304913 (SGN)
122101 (CGN)
---
Lycopersicon CombinedSingleSGN-U221833---
Solanum tuberosumSingleSGN-U264120---
ArabidopsisSingleAt3g21740 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26270)
Chromosome
3
Position
7.66 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41429
Forward primer (5'-3')
ATTTGAGGAAGCTAAGGCCAATG
Accessions and product sizes
Solanum lycopersicum TA209
350
Solanum pennellii TA56
350
Approximate temperature
55°C
Reverse primer (5'-3')
AGCACAGTTCCACAACTGCTGGG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
225
Solanum lycopersicum TA209
350
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g21740  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7839 marker 7839
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