SGN Marker C2_At3g24350

SGN-M7862
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303582 (SGN)
124306 (CGN)
---
Capsicum annuumSingleSGN-U201250---
Lycopersicon CombinedMultipleSGN-U218149---
Solanum tuberosumSingleSGN-U250302---
ArabidopsisSingleAt3g24350 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26294)
Chromosome
3
Position
8.84 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41436
Forward primer (5'-3')
AAGTGCGTCATTACGGGATCGGAC
Accessions and product sizes
Solanum lycopersicum TA209
Multiple
Solanum pennellii TA56
Multiple
Approximate temperature
55°C
Reverse primer (5'-3')
AGCTGGAGATCTACTACAGCAGAGTTAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11139
Forward primer (5'-3')
AAGTGCGTCATTACGGGATCGGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTGGAGATCTACTACAGCAGAGTTAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2900
Approximate temperature
55°C
  
PCR data   Exp. ID 11140
Forward primer (5'-3')
AAGTGCGTCATTACGGGATCGGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTGGAGATCTACTACAGCAGAGTTAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2700
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g24350  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7862 marker 7862
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