SGN Marker C2_At3g26710

SGN-M7889
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308140 (SGN)
128435 (CGN)
---
Capsicum annuumSingleSGN-U198779---
Lycopersicon CombinedSingleSGN-U220615---
Solanum tuberosumSingleSGN-U265357---
ArabidopsisSingleAt3g26710 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26322)
Chromosome
3
Position
9.82 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41449
Forward primer (5'-3')
TTCGCTGTGTTGGATAGAGGAGAGAC
Accessions and product sizes
Solanum pennellii TA56
450
Solanum lycopersicum TA209
450
Approximate temperature
55°C
Reverse primer (5'-3')
TGCCTGTCCTCGGCTTGGAACCATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11158
Forward primer (5'-3')
TTCGCTGTGTTGGATAGAGGAGAGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTGTCCTCGGCTTGGAACCATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 700
Approximate temperature
55°C
  
PCR data   Exp. ID 11159
Forward primer (5'-3')
TTCGCTGTGTTGGATAGAGGAGAGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTGTCCTCGGCTTGGAACCATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 700
Approximate temperature
55°C
  
PCR data   Exp. ID 11160
Forward primer (5'-3')
TTCGCTGTGTTGGATAGAGGAGAGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTGTCCTCGGCTTGGAACCATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 700
Approximate temperature
55°C
  
PCR data   Exp. ID 11161
Forward primer (5'-3')
TTCGCTGTGTTGGATAGAGGAGAGAC
Digested band sizes (using MspI)
Solanum lycopersicum LA925: 300+400
Solanum pennellii LA716: 700
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTGTCCTCGGCTTGGAACCATC
Enzymes
All possible enzymes for pennellii and and lycopersicum: ApoI,BsiHKAI,BslI,BspEI,DraI,HaeIII,HinfI,Hpy188I,MspI,PflMI,XcmI
All possible enzymes for lycopersicum and pimpinellifolium: ApoI,BslI,StyI,XcmI
  
Accessions and product sizes
Solanum pennellii LA716: 700
Solanum lycopersicum LA925: 700
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At3g26710F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At3g26710  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7889 marker 7889
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