SGN Marker C2_At3g28050

SGN-M7908
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301054 (SGN)
121464 (CGN)
---
Lycopersicon CombinedSingleSGN-U216863---
Solanum tuberosumSingleSGN-U254037---
ArabidopsisSingleAt3g28050 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46684)
Chromosome
2
Position
8.50 cM
Confidence
F(LOD3)
Protocol
PCR


Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38523)
Chromosome
2
Position
97.50 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39744
Forward primer (5'-3')
ACGCTTGCCTCCGCCATCAG
Accessions and product sizes
Solanum lycopersicum TA209
2000
Solanum pennellii TA56
2000
Approximate temperature
55°C
Reverse primer (5'-3')
TCAGTTGTGAGGAAAAGGCCACC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
1000
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26341)
Chromosome
3
Position
10.45 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11166
Forward primer (5'-3')
ACGCTTGCCTCCGCCATCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGTTGTGAGGAAAAGGCCACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 320+850
Approximate temperature
55°C
  
PCR data   Exp. ID 11167
Forward primer (5'-3')
ACGCTTGCCTCCGCCATCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGTTGTGAGGAAAAGGCCACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 850
Approximate temperature
55°C
  
PCR data   Exp. ID 11168
Forward primer (5'-3')
ACGCTTGCCTCCGCCATCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAGTTGTGAGGAAAAGGCCACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 850
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g28050  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7908 marker 7908
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