SGN Marker C2_At3g47810

SGN-M7940
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple303171 (SGN)
121017 (CGN)		---
Capsicum annuumSingleSGN-U205274---
Lycopersicon CombinedSingleSGN-U217617---
Solanum tuberosumSingleSGN-U247747---
ArabidopsisSingleAt3g47810 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26374)
Chromosome
3
Position
17.65 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41465
Forward primer (5'-3')
ATCTTCCTGCAAAGTTTAAGTCTATGC
Accessions and product sizes
Solanum lycopersicum TA209
1300
Solanum pennellii TA56
1300
Approximate temperature
55°C
Reverse primer (5'-3')
AATCCAAGCTTAAATTGACCAATGG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
550+580
Solanum lycopersicum TA209
580+1300
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11194
Forward primer (5'-3')
ATCTTCCTGCAAAGTTTAAGTCTATGC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
AATCCAAGCTTAAATTGACCAATGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
 Approximate temperature
Unknown
  
PCR data   Exp. ID 11195
Forward primer (5'-3')
ATCTTCCTGCAAAGTTTAAGTCTATGC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
AATCCAAGCTTAAATTGACCAATGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
 Approximate temperature
Unknown
  
Unigene blast matches for primers 
SGN-U206389
SGN-U217617
SGN-U272879
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g47810  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7940 marker 7940
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