SGN Marker C2_At3g51800

SGN-M7983
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U203859---
Solanum tuberosumSingleSGN-U245822---
ArabidopsisSingleAt3g51800 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26417)
Chromosome
3
Position
19.22 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41480
Forward primer (5'-3')
TGGTGTTGTCCGAATGCAAGCC
Accessions and product sizes
Solanum lycopersicum TA209
1300
Solanum pennellii TA56
1300
Approximate temperature
55°C
Reverse primer (5'-3')
AATACATGTTGGAAATGCAACACCTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
850
Solanum lycopersicum TA209
1300
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11213
Forward primer (5'-3')
TGGTGTTGTCCGAATGCAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATACATGTTGGAAATGCAACACCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 11214
Forward primer (5'-3')
TGGTGTTGTCCGAATGCAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATACATGTTGGAAATGCAACACCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 11215
Forward primer (5'-3')
TGGTGTTGTCCGAATGCAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AATACATGTTGGAAATGCAACACCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 250
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At3g51800  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7983 marker 7983
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