SGN Marker C2_At3g51840

SGN-M7985
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309261 (SGN)
126703 (CGN)
---
Capsicum annuumSingleSGN-U203482---
Lycopersicon CombinedMultipleSGN-U216994---
Solanum tuberosumSingleSGN-U258363---
ArabidopsisSingleAt3g51840 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46691)
Chromosome
10
Position
33.10 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Tobacco N. acuminata   
Map version
89 (location: 46497)
Chromosome
10
Position
11.80 cM
Confidence
F(LOD3)
Protocol
dCAPS


Tobacco N. acuminata

Map: Pepper-COSII   
Map version
58 (location: 41442)
Chromosome
10
Position
67.00 cM
Confidence
I
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43418
Forward primer (5'-3')
TGATATGCATAAAGAGGCGAAAAGCTC
Accessions and product sizes
Approximate temperature
60°C
Reverse primer (5'-3')
ATGGCTTGCTCCTCAGGAGTCAACAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38548)
Chromosome
10
Position
75.50 cM
Confidence
F(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41481
Forward primer (5'-3')
TGATATGCATAAAGAGGCGAAAAGCTC
Accessions and product sizes
Solanum lycopersicum TA209
325
Solanum pennellii TA56
325
Approximate temperature
55°C
Reverse primer (5'-3')
ATGGCTTGCTCCTCAGGAGTCAACAG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
175
Solanum lycopersicum TA209
175
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26419)
Chromosome
3
Position
19.24 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At3g51840  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7985 marker 7985
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