SGN Marker C2_At3g52120

SGN-M7991
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple302195 (SGN)
124347 (CGN)		---
Capsicum annuumSingleSGN-U202250---
Lycopersicon CombinedMultipleSGN-U217358---
Solanum tuberosumSingleSGN-U250463---
ArabidopsisSingleAt3g52120 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46692)
Chromosome
1
Position
5.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Tobacco N. acuminata   
Map version
89 (location: 46498)
Chromosome
1
Position
62.30 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. acuminata

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38551)
Chromosome
1
Position
47.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39761
Forward primer (5'-3')
AAGTGATCCAGCAGTGAAGAAAGTTG
Accessions and product sizes
Solanum lycopersicum TA209
950
Approximate temperature
55°C
Reverse primer (5'-3')
TGATAGAGCCTTTTCCTCTTCACTAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26425)
Chromosome
3
Position
19.34 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11216
Forward primer (5'-3')
AAGTGATCCAGCAGTGAAGAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAGAGCCTTTTCCTCTTCACTAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 700
 Approximate temperature
55°C
  
PCR data   Exp. ID 11217
Forward primer (5'-3')
AAGTGATCCAGCAGTGAAGAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAGAGCCTTTTCCTCTTCACTAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 650
 Approximate temperature
55°C
  
PCR data   Exp. ID 11218
Forward primer (5'-3')
AAGTGATCCAGCAGTGAAGAAAGTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAGAGCCTTTTCCTCTTCACTAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 650
 Approximate temperature
55°C
  
PCR data   Exp. ID 32413
Forward primer (5'-3')
AAGTGATCCAGCAGTGAAGAAAGTTG
Digested band sizes (using amplicon difference)
Solanum lycopersicum LA925: 650
Solanum pennellii LA716: 700
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAGAGCCTTTTCCTCTTCACTAAG
Enzymes
All possible enzymes for pennellii and and lycopersicum: amplicon difference
   
Accessions and product sizes
Solanum lycopersicum LA925: 650
Solanum pennellii LA716: 700
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U202250
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g52120  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7991 marker 7991
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