SGN Marker C2_At3g52300

SGN-M7997
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300864 (SGN)
121556 (CGN)
---
Capsicum annuumSingleSGN-U200040---
Lycopersicon CombinedSingleSGN-U214410---
Solanum tuberosumMultipleSGN-U245148---
ArabidopsisSingleAt3g52300 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26432)
Chromosome
3
Position
19.41 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41486
Forward primer (5'-3')
TCTCGCTTGGTAGACATGTACAAAG
Accessions and product sizes
Solanum pennellii TA56
750
Solanum lycopersicum TA209
750
Approximate temperature
55°C
Reverse primer (5'-3')
ACTGTGTCCTCAAACTTGGGGATCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11223
Forward primer (5'-3')
TCTCGCTTGGTAGACATGTACAAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACTGTGTCCTCAAACTTGGGGATCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 750
Approximate temperature
55°C
  
PCR data   Exp. ID 11224
Forward primer (5'-3')
TCTCGCTTGGTAGACATGTACAAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACTGTGTCCTCAAACTTGGGGATCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 750
Approximate temperature
55°C
  
PCR data   Exp. ID 11225
Forward primer (5'-3')
TCTCGCTTGGTAGACATGTACAAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACTGTGTCCTCAAACTTGGGGATCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 750
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At3g52300  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7997 marker 7997
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