SGN Marker C2_At3g53110

SGN-M8009
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310467 (SGN)
126138 (CGN)		---
Lycopersicon CombinedMultipleSGN-U214011---
Solanum tuberosumSingleSGN-U251448---
ArabidopsisSingleAt3g53110 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26444)
Chromosome
3
Position
19.70 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41489
Forward primer (5'-3')
TCGGATCTTTACAAGTCGATGAGTCC
Accessions and product sizes
Solanum lycopersicum TA209
1850
Solanum pennellii TA56
1850
Approximate temperature
55°C
Reverse primer (5'-3')
TTGAGGGGCAGCAAGCTTTGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11230
Forward primer (5'-3')
TCGGATCTTTACAAGTCGATGAGTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGAGGGGCAGCAAGCTTTGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 11231
Forward primer (5'-3')
TCGGATCTTTACAAGTCGATGAGTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGAGGGGCAGCAAGCTTTGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 11232
Forward primer (5'-3')
TCGGATCTTTACAAGTCGATGAGTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGAGGGGCAGCAAGCTTTGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U214011
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At3g53110F.cds.txt, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At3g53110F.cds.txt, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g53110  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8009 marker 8009
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