Sol Genomics Network

SGN Marker C2_At3g55360

SGN-M8047
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301926 (SGN) 119801 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U216472	-	-	-
Solanum tuberosum	Single	SGN-U245387	-	-	-
Arabidopsis	Single	At3g55360 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46703)
Chromosome 5
Position 33.40 cM
Confidence F(LOD3)
Protocol PCR

Tobacco N. tomentosiformis

Map: Pepper-COSII
Map version 58 (location: 41448)
Chromosome 5
Position 99.30 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43424

Forward primer (5'-3')

TGTTAGTGATCTCCAGATGAAGATTGG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

GTCTTCCTTCCTTTCCATCAAAGAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38574)
Chromosome 5
Position 107.70 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39770

Forward primer (5'-3')

TTTAGTGGTTACACGTAGCGGC

Accessions and product sizes

Approximate temperature

Unknown

Reverse primer (5'-3')

TGCCTCCTGCAGATCAGCAAC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26483)
Chromosome 3
Position 20.53 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11254
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 600	Approximate temperature 55°C

PCR data Exp. ID 11255
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 750	Approximate temperature 55°C

PCR data Exp. ID 11256
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 750	Approximate temperature 55°C

PCR data Exp. ID 13332
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 650	Approximate temperature 55°C

PCR data Exp. ID 13333
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 13334
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 300	Approximate temperature 55°C

PCR data Exp. ID 13335
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 300	Approximate temperature 55°C

PCR data Exp. ID 13336
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 850	Approximate temperature 55°C

PCR data Exp. ID 13337
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 850	Approximate temperature 55°C

PCR data Exp. ID 32637
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 850	Approximate temperature 55°C

PCR data Exp. ID 33064
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 850	Approximate temperature 55°C

PCR data Exp. ID 33065
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 550	Approximate temperature 55°C

PCR data Exp. ID 33066
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 33067
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 300	Approximate temperature 55°C

PCR data Exp. ID 11257
Forward primer (5'-3') TTTAGTGGTTACACGTAGCGGC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 600 Solanum lycopersicum LA925: 750	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCCTCCTGCAGATCAGCAAC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: DraI
Accessions and product sizes Solanum pennellii LA716: 600 Solanum lycopersicum LA925: 750	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U216472

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At3g55360

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8047 marker 8047

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer