SGN Marker C2_At3g55520

SGN-M8049
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple304984 (SGN)
121657 (CGN)		---
Capsicum annuumSingleSGN-U198069---
Lycopersicon CombinedMultipleSGN-U219317---
Solanum tuberosumSingleSGN-U250357---
ArabidopsisSingleAt3g55520 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26485)
Chromosome
3
Position
20.61 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41501
Forward primer (5'-3')
AATTGATTTGACTGGAGATGGAGGTG
Accessions and product sizes
Solanum lycopersicum TA209
250
Solanum pennellii TA56
250
Approximate temperature
55°C
Reverse primer (5'-3')
TGGTCCTCAGTGCAACATCCCAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11258
Forward primer (5'-3')
AATTGATTTGACTGGAGATGGAGGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTCCTCAGTGCAACATCCCAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1750
 Approximate temperature
55°C
  
PCR data   Exp. ID 11259
Forward primer (5'-3')
AATTGATTTGACTGGAGATGGAGGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTCCTCAGTGCAACATCCCAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1750
 Approximate temperature
55°C
  
PCR data   Exp. ID 11260
Forward primer (5'-3')
AATTGATTTGACTGGAGATGGAGGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTCCTCAGTGCAACATCCCAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1750
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U219317
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g55520  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8049 marker 8049
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