SGN Marker C2_At3g57290

SGN-M8073
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle299960 (SGN)
120966 (CGN)		---
Capsicum annuumSingleSGN-U196727---
Lycopersicon CombinedSingleSGN-U216471---
Solanum tuberosumMultipleSGN-U243653---
ArabidopsisSingleAt3g57290 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26509)
Chromosome
3
Position
21.21 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41510
Forward primer (5'-3')
ACCGAGCATTGTGCACAAACAGTG
Accessions and product sizes
Solanum lycopersicum TA209
300
Approximate temperature
Unknown
Reverse primer (5'-3')
ACTCCAATGCATTAGCCATATTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11276
Forward primer (5'-3')
ACCGAGCATTGTGCACAAACAGTG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
ACTCCAATGCATTAGCCATATTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
 Approximate temperature
Unknown
  
PCR data   Exp. ID 11277
Forward primer (5'-3')
ACCGAGCATTGTGCACAAACAGTG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
ACTCCAATGCATTAGCCATATTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
 Approximate temperature
Unknown
  
Unigene blast matches for primers 
SGN-U216471
SGN-U268661
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g57290  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8073 marker 8073
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