Sol Genomics Network

SGN-M8086
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	300793 (SGN) 119651 (CGN)	-	-	-
Capsicum annuum	Multiple	SGN-U198396	-	-	-
Lycopersicon Combined	Single	SGN-U214673	-	-	-
Solanum tuberosum	Single	SGN-U244441	-	-	-
Arabidopsis	Single	At3g58730 on TAIR	-	-	-

Tomato-EXPEN 2000

PCR data Exp. ID 39780

Forward primer (5'-3')

CCTCATTTGCTCTGACAGAGGCCAAAGAT

Accessions and product sizes

Approximate temperature

Unknown

Reverse primer (5'-3')

AAGAACTGTGTTCTCCAACCGAGG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11285
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTCAAACTTGGGGAGCTTCAC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 300	Approximate temperature 53°C

PCR data Exp. ID 11286
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTCAAACTTGGGGAGCTTCAC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 300	Approximate temperature 53°C

PCR data Exp. ID 11287
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGCTCAAACTTGGGGAGCTTCAC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 300	Approximate temperature 53°C

PCR data Exp. ID 12297
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 550	Approximate temperature 55°C

PCR data Exp. ID 12298
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 550	Approximate temperature 55°C

PCR data Exp. ID 12299
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 550	Approximate temperature 55°C

PCR data Exp. ID 12300
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 550	Approximate temperature 55°C

PCR data Exp. ID 12301
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 12302
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 550	Approximate temperature 55°C

PCR data Exp. ID 12303
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 550	Approximate temperature 55°C

PCR data Exp. ID 12304
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 550	Approximate temperature 55°C

PCR data Exp. ID 12305
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Physalis TA1367: 550	Approximate temperature 55°C

PCR data Exp. ID 12306
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 550	Approximate temperature 55°C

PCR data Exp. ID 12307
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 550	Approximate temperature 55°C

PCR data Exp. ID 12308
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Coffea canephora BP409: 550	Approximate temperature 55°C

PCR data Exp. ID 33352
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 550	Approximate temperature 55°C

PCR data Exp. ID 33353
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 550	Approximate temperature 55°C

PCR data Exp. ID 33354
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 550	Approximate temperature 55°C

PCR data Exp. ID 33355
Forward primer (5'-3') TTGGAGTTATTAAAGCTCGCCTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AAGAACTGTGTTCTCCAACCGAGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 550	Approximate temperature 55°C