Sol Genomics Network

SGN Marker C2_At4g00090

SGN-M8138
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301281 (SGN) 119452 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U201719	-	-	-
Lycopersicon Combined	Single	SGN-U223776	-	-	-
Solanum tuberosum	Multiple	SGN-U246208	-	-	-
Arabidopsis	Single	At4g00090 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49264)
Chromosome 1
Position 76.72 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47201)
Chromosome 1
Position 61.02 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46708)
Chromosome 1
Position 51.00 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000
Map version 52 (location: 38601)
Chromosome 1
Position 57.50 cM
Confidence F(LOD3)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39792

Forward primer (5'-3')

AGATATTGGCCACCACTCATGGTTC

Accessions and product sizes

Solanum lycopersicum TA209

350

Solanum pennellii TA56

350

Approximate temperature

55°C

Reverse primer (5'-3')

AGGCGACCATGCCATGTCCG

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

300

Solanum lycopersicum TA209

190

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26575)
Chromosome 4
Position 0.04 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11317
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 800	Approximate temperature 55°C

PCR data Exp. ID 11318
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 800	Approximate temperature 55°C

PCR data Exp. ID 11319
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 800	Approximate temperature 55°C

PCR data Exp. ID 13351
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 700	Approximate temperature 55°C

PCR data Exp. ID 13352
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 750+1500	Approximate temperature 55°C

PCR data Exp. ID 13353
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13354
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 800	Approximate temperature 55°C

PCR data Exp. ID 13355
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 800	Approximate temperature 55°C

PCR data Exp. ID 13356
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 800	Approximate temperature 55°C

PCR data Exp. ID 13357
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Physalis TA1367: 750+1700	Approximate temperature 55°C

PCR data Exp. ID 13358
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 650	Approximate temperature 55°C

PCR data Exp. ID 13359
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 580	Approximate temperature 55°C

PCR data Exp. ID 13360
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 580	Approximate temperature 55°C

PCR data Exp. ID 13361
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 800	Approximate temperature 55°C

PCR data Exp. ID 13362
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Coffea canephora BP409: 650	Approximate temperature 55°C

PCR data Exp. ID 33076
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 800	Approximate temperature 55°C

PCR data Exp. ID 33077
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 800	Approximate temperature 55°C

PCR data Exp. ID 33078
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 800	Approximate temperature 55°C

PCR data Exp. ID 11320
Forward primer (5'-3') AGATATTGGCCACCACTCATGGTTC	Digested band sizes (using DpnII) Solanum pennellii LA716: 420+350 Solanum lycopersicum LA925: 420+290	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCGACCATGCCATGTCCG	Enzymes All possible enzymes for pennellii and and lycopersicum: DpnII All possible enzymes for lycopersicum and pimpinellifolium: RsaI
Accessions and product sizes Solanum pennellii LA716: 800 Solanum lycopersicum LA925: 800	Approximate temperature 55°C