SGN Marker C2_At4g01320

SGN-M8147
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309279 (SGN)
128004 (CGN)
---
Solanum tuberosumSingleSGN-U255028---
ArabidopsisSingleAt4g01320 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26584)
Chromosome
4
Position
0.55 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41530
Forward primer (5'-3')
TGCACCTCTTCGAGCCGGTCTTG
Accessions and product sizes
Solanum pennellii TA56
300
Solanum lycopersicum TA209
300
Approximate temperature
55°C
Reverse primer (5'-3')
AGCCAATCTTTCAACGAGGGGAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11331
Forward primer (5'-3')
TGCACCTCTTCGAGCCGGTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCCAATCTTTCAACGAGGGGAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 11332
Forward primer (5'-3')
TGCACCTCTTCGAGCCGGTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCCAATCTTTCAACGAGGGGAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 11333
Forward primer (5'-3')
TGCACCTCTTCGAGCCGGTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCCAATCTTTCAACGAGGGGAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format

Genomic location of C2_At4g01320  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8147 marker 8147
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