Sol Genomics Network

SGN Marker C2_At4g03020

SGN-M8175
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U198346	-	-	-
Lycopersicon Combined	Multiple	SGN-U215943	-	-	-
Solanum tuberosum	Single	SGN-U248001	-	-	-
Arabidopsis	Single	At4g03020 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 26612)
Chromosome 4
Position 1.33 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41538

Forward primer (5'-3')

AGACACCGGACTCTTTGATGGTTC

Accessions and product sizes

Solanum pennellii TA56

800

Solanum lycopersicum TA209

800

Approximate temperature

55°C

Reverse primer (5'-3')

AAGCTTAGTAAGTTGAGAAATTTCATGG

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

350+420

Solanum lycopersicum TA209

290+420

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11344
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') AAGCTTAGTAAGTTGAGAAATTTCATGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 150	Approximate temperature 53°C

PCR data Exp. ID 11345
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') AAGCTTAGTAAGTTGAGAAATTTCATGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 150	Approximate temperature 53°C

PCR data Exp. ID 11346
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 3mM
Reverse primer (5'-3') AAGCTTAGTAAGTTGAGAAATTTCATGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 150	Approximate temperature 53°C

PCR data Exp. ID 12309
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 850	Approximate temperature 55°C

PCR data Exp. ID 12310
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 850	Approximate temperature 55°C

PCR data Exp. ID 12311
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 580	Approximate temperature 55°C

PCR data Exp. ID 12312
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 12313
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 580+850	Approximate temperature 55°C

PCR data Exp. ID 12314
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580+850	Approximate temperature 55°C

PCR data Exp. ID 12315
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580+850	Approximate temperature 55°C

PCR data Exp. ID 12316
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Physalis TA1367: 550	Approximate temperature 55°C

PCR data Exp. ID 12317
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 580+850	Approximate temperature 55°C

PCR data Exp. ID 12318
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 580+850	Approximate temperature 55°C

PCR data Exp. ID 33356
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 33357
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 580+850	Approximate temperature 55°C

PCR data Exp. ID 33358
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580+850	Approximate temperature 55°C

PCR data Exp. ID 33359
Forward primer (5'-3') AGACACCGGACTCTTTGATGGTTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGTTGATCCGGAGAAAGAGATGTATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580+850	Approximate temperature 55°C