SGN Marker C2_At4g16440

SGN-M8271
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple300707 (SGN)
120110 (CGN)
---
Capsicum annuumSingleSGN-U202771---
Lycopersicon CombinedSingleSGN-U231674---
Solanum tuberosumSingleSGN-U249791---
ArabidopsisSingleAt4g16440 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38645)
Chromosome
8
Position
24.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41565
Forward primer (5'-3')
AAAAGGGAAGGACGGTTATTGTCTC
Accessions and product sizes
Solanum pennellii TA56
1300
Solanum lycopersicum TA209
1300
Approximate temperature
55°C
Reverse primer (5'-3')
ATCCACCATGACTCGTACAAAAGATTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1100
Solanum lycopersicum TA209
1300
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26712)
Chromosome
4
Position
9.27 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At4g16440  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8271 marker 8271
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)