SGN Marker C2_At4g21445

SGN-M8315
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306410 (SGN)
130191 (CGN)
---
Lycopersicon CombinedSingleSGN-U240549---
ArabidopsisSingleAt4g21445 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26755)
Chromosome
4
Position
11.43 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41581
Forward primer (5'-3')
AGGCGTACCTTTTTGACACTAGAAGAAG
Accessions and product sizes
Solanum pennellii TA56
250+350
Solanum lycopersicum TA209
250+350
Approximate temperature
55°C
Reverse primer (5'-3')
TCCAAATTTTGTTCTCTTTTAAGCTTATC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11441
Forward primer (5'-3')
AGGCGTACCTTTTTGACACTAGAAGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAATTTTGTTCTCTTTTAAGCTTATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 850
Approximate temperature
55°C
  
PCR data   Exp. ID 11442
Forward primer (5'-3')
AGGCGTACCTTTTTGACACTAGAAGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAATTTTGTTCTCTTTTAAGCTTATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 850
Approximate temperature
55°C
  
PCR data   Exp. ID 11443
Forward primer (5'-3')
AGGCGTACCTTTTTGACACTAGAAGAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCAAATTTTGTTCTCTTTTAAGCTTATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 800
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At4g21445F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At4g21445  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8315 marker 8315
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