SGN Marker C2_At4g21790

SGN-M8323
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308341 (SGN)
127214 (CGN)		---
Capsicum annuumSingleSGN-U198912---
Lycopersicon CombinedSingleSGN-U224311---
ArabidopsisSingleAt4g21790 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26763)
Chromosome
4
Position
11.57 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41583
Forward primer (5'-3')
TCCTGACGCATCTCTTGATGTCTTGG
Accessions and product sizes
Solanum lycopersicum TA209
230
Solanum pennellii TA56
230
Approximate temperature
55°C
Reverse primer (5'-3')
TTTCGCAGGATGTAGAGCACAAGAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11454
Forward primer (5'-3')
TCCTGACGCATCTCTTGATGTCTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTCGCAGGATGTAGAGCACAAGAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 180
 Approximate temperature
55°C
  
PCR data   Exp. ID 11455
Forward primer (5'-3')
TCCTGACGCATCTCTTGATGTCTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTCGCAGGATGTAGAGCACAAGAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 180
 Approximate temperature
55°C
  
PCR data   Exp. ID 11456
Forward primer (5'-3')
TCCTGACGCATCTCTTGATGTCTTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTCGCAGGATGTAGAGCACAAGAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 180
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U198912
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g21790  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8323 marker 8323
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