Sol Genomics Network

SGN-M8336
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301253 (SGN) 120198 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U216570	-	-	-
Solanum tuberosum	Multiple	SGN-U245683	-	-	-
Arabidopsis	Single	At4g23100 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41586

Forward primer (5'-3')

TGCAAGTCCTCCAACAGAGGATGC

Accessions and product sizes

Solanum lycopersicum TA209

320

Solanum pennellii TA56

320

Approximate temperature

55°C

Reverse primer (5'-3')

AGGCCAATAATCTTGTCACCCTCC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11471
Forward primer (5'-3') TGCAAGTCCTCCAACAGAGGATGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCCAATAATCTTGTCACCCTCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 850	Approximate temperature 55°C

PCR data Exp. ID 11472
Forward primer (5'-3') TGCAAGTCCTCCAACAGAGGATGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCCAATAATCTTGTCACCCTCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 850	Approximate temperature 55°C

PCR data Exp. ID 11473
Forward primer (5'-3') TGCAAGTCCTCCAACAGAGGATGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGGCCAATAATCTTGTCACCCTCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 850	Approximate temperature 55°C