SGN Marker SSR162

SGN-M835

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 50 High: 45.833
Repeat motif: TA   Repeat number: 14
Repeat motif:    Repeat number:
Forward primer: GCTCTCTACAAGTGGAACTTTCTC
Reverse primer: CAACAGCCAGGAACAAGGAT
Predicted size: 224
Mapped locations  
Map: Sun1642 x LA1589   
Map version
85 (location: 43783)
Chromosome
5
Position
93.10 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44786
Forward primer (5'-3')
GCTCTCTACAAGTGGAACTTTCTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
CAACAGCCAGGAACAAGGAT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43243)
Chromosome
5
Position
85.30 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44600
Forward primer (5'-3')
GCTCTCTACAAGTGGAACTTTCTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
CAACAGCCAGGAACAAGGAT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40780)
Chromosome
5
Position
99.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39183)
Chromosome
5
Position
119.00 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 14116
Forward primer (5'-3')
GCTCTCTACAAGTGGAACTTTCTC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
CAACAGCCAGGAACAAGGAT
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 224+246
Solanum lycopersicum LA925: 224+250
 Approximate temperature
50°C
  
Genomic location of SSR162  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D835 marker 835
User comments 
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