SGN Marker C2_At4g25080

SGN-M8363
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306640 (SGN)
129764 (CGN)
---
Capsicum annuumSingleSGN-U204094---
Lycopersicon CombinedMultipleSGN-U217574---
Solanum tuberosumSingleSGN-U247054---
ArabidopsisSingleAt4g25080 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26804)
Chromosome
4
Position
12.88 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41595
Forward primer (5'-3')
AGGGATCTCTACAGGGAGTTACTG
Accessions and product sizes
Solanum pennellii TA56
1000
Solanum lycopersicum TA209
1000
Approximate temperature
55°C
Reverse primer (5'-3')
ATCCAAACTCTCCAAGTCCTTCAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11495
Forward primer (5'-3')
AGGGATCTCTACAGGGAGTTACTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCCAAACTCTCCAAGTCCTTCAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 11496
Forward primer (5'-3')
AGGGATCTCTACAGGGAGTTACTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCCAAACTCTCCAAGTCCTTCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 11497
Forward primer (5'-3')
AGGGATCTCTACAGGGAGTTACTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCCAAACTCTCCAAGTCCTTCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At4g25080  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8363 marker 8363
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