SGN Marker C2_At4g28830

SGN-M8396
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U197009---
Lycopersicon CombinedSingleSGN-U226609---
ArabidopsisSingleAt4g28830 on TAIR---
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49278)
Chromosome
12
Position
0.63 MB
Confidence
uncalculated
Protocol
CAPS


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47217)
Chromosome
12
Position
14.00 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Eggplant-COSII   
Map version
63 (location: 42244)
Chromosome
10
Position
32.20 cM
Confidence
F(LOD3)
Protocol
CAPS


Eggplant-COSII

PCR data   Exp. ID 43811
Forward primer (5'-3')
ATTTGAGGATGTGAACAGTAAGGTGG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
GTGTTCCAAAAGGTGGATTCATAAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Pepper-COSII   
Map version
58 (location: 41487)
Chromosome
9
Position
62.10 cM
Confidence
F(LOD3)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43463
Forward primer (5'-3')
ATTTGAGGATGTGAACAGTAAGGTGG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
GACTTTGATTACTATTCCTTGTCTTCA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38683)
Chromosome
12
Position
14.20 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39860
Forward primer (5'-3')
TGAAAAGAGCAGCCTTGCGAGATTA
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TACAGTTGTGGCACATCATACCGAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26837)
Chromosome
4
Position
14.23 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g28830  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8396 marker 8396
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