SGN Marker C2_At4g29120

SGN-M8399
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303133 (SGN)
120339 (CGN)
---
Capsicum annuumSingleSGN-U200975---
Lycopersicon CombinedSingleSGN-U224823---
Solanum tuberosumSingleSGN-U250376---
ArabidopsisSingleAt4g29120 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38684)
Chromosome
1
Position
112.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39861
Forward primer (5'-3')
TCCTCACCGTCACCGCCGCC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGGGTTCCTAAATCGCCCTCACC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26840)
Chromosome
4
Position
14.35 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11512
Forward primer (5'-3')
TCCTCACCGTCACCGCCGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGTTCCTAAATCGCCCTCACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 900
Approximate temperature
55°C
  
PCR data   Exp. ID 11513
Forward primer (5'-3')
TCCTCACCGTCACCGCCGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGTTCCTAAATCGCCCTCACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 900
Approximate temperature
55°C
  
PCR data   Exp. ID 11514
Forward primer (5'-3')
TCCTCACCGTCACCGCCGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGGTTCCTAAATCGCCCTCACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 900
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At4g29120  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8399 marker 8399
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