SGN Marker C2_At4g32260

SGN-M8432
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304765 (SGN)
122658 (CGN)		---
Capsicum annuumSingleSGN-U200774---
Lycopersicon CombinedMultipleSGN-U213990---
Solanum tuberosumSingleSGN-U245308---
ArabidopsisSingleAt4g32260 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26876)
Chromosome
4
Position
15.57 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41616
Forward primer (5'-3')
ACTTCAGCCCATTAGGGAAATTC
Accessions and product sizes
Solanum pennellii TA56
200
Solanum lycopersicum TA209
200
Approximate temperature
55°C
Reverse primer (5'-3')
TCCTTCTGCAATCTTCTGCTCTACTTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11536
Forward primer (5'-3')
ACTTCAGCCCATTAGGGAAATTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTCTGCAATCTTCTGCTCTACTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11537
Forward primer (5'-3')
ACTTCAGCCCATTAGGGAAATTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTCTGCAATCTTCTGCTCTACTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11538
Forward primer (5'-3')
ACTTCAGCCCATTAGGGAAATTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCTTCTGCAATCTTCTGCTCTACTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U213990
SGN-U270385
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g32260  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8432 marker 8432
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