SGN Marker C2_At4g34190

SGN-M8465
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198457---
Lycopersicon CombinedMultipleSGN-U216629---
Solanum tuberosumSingleSGN-U247180---
ArabidopsisSingleAt4g34190 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38710)
Chromosome
1
Position
152.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39880
Forward primer (5'-3')
AGTAATTTGGATGTATGGCTTGGTCG
Accessions and product sizes
Solanum lycopersicum TA209
2700
Approximate temperature
Unknown
Reverse primer (5'-3')
ACCAATGCAGTGACTGCCAATGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26909)
Chromosome
4
Position
16.37 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11565
Forward primer (5'-3')
AGTAATTTGGATGTATGGCTTGGTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAATGCAGTGACTGCCAATGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 650
Approximate temperature
55°C
  
PCR data   Exp. ID 11566
Forward primer (5'-3')
AGTAATTTGGATGTATGGCTTGGTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAATGCAGTGACTGCCAATGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 650
Approximate temperature
55°C
  
PCR data   Exp. ID 11567
Forward primer (5'-3')
AGTAATTTGGATGTATGGCTTGGTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAATGCAGTGACTGCCAATGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 650
Approximate temperature
55°C
  
PCR data   Exp. ID 11568
Forward primer (5'-3')
AGTAATTTGGATGTATGGCTTGGTCG
Digested band sizes (using AluI)
Solanum lycopersicum LA925: 630
Solanum pennellii LA716: 650
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAATGCAGTGACTGCCAATGC
Enzymes
All possible enzymes for pennellii and and lycopersicum: AluI
  
Accessions and product sizes
Solanum lycopersicum LA925: 650
Solanum pennellii LA716: 650
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

Genomic location of C2_At4g34190  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8465 marker 8465
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