SGN Marker C2_At4g35850

SGN-M8484
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310912 (SGN)
126354 (CGN)		---
Capsicum annuumSingleSGN-U201963---
Lycopersicon CombinedSingleSGN-U216857---
Solanum tuberosumMultipleSGN-U245330---
ArabidopsisSingleAt4g35850 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26929)
Chromosome
4
Position
16.99 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41637
Forward primer (5'-3')
ACCTGTCACAGATGATGTAGCTTCC
Accessions and product sizes
Solanum pennellii TA56
150
Solanum lycopersicum TA209
150
Approximate temperature
55°C
Reverse primer (5'-3')
ACCAACCCTTGGACTGCTCAAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11583
Forward primer (5'-3')
ACCTGTCACAGATGATGTAGCTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAACCCTTGGACTGCTCAAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 11584
Forward primer (5'-3')
ACCTGTCACAGATGATGTAGCTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAACCCTTGGACTGCTCAAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 11585
Forward primer (5'-3')
ACCTGTCACAGATGATGTAGCTTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCAACCCTTGGACTGCTCAAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U216857
SGN-U270860
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At4g35850  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8484 marker 8484
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