SGN Marker C2_At5g07270

SGN-M8607
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Lycopersicon CombinedSingleSGN-U220087---
Solanum tuberosumSingleSGN-U262423---
ArabidopsisSingleAt5g07270 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27060)
Chromosome
5
Position
2.28 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11658
Forward primer (5'-3')
TGCCGCTAAGGGCCACAACG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCACCATTCTCAAGCAACAATGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11659
Forward primer (5'-3')
TGCCGCTAAGGGCCACAACG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCACCATTCTCAAGCAACAATGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11660
Forward primer (5'-3')
TGCCGCTAAGGGCCACAACG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCACCATTCTCAAGCAACAATGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At5g07270  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8607 marker 8607
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)