SGN Marker C2_At5g09380

SGN-M8625
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300827 (SGN)
121647 (CGN)
---
Lycopersicon CombinedSingleSGN-U221806---
ArabidopsisSingleAt5g09380 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46745)
Chromosome
5
Position
19.80 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Tobacco N. acuminata   
Map version
89 (location: 46522)
Chromosome
5
Position
6.50 cM
Confidence
I(LOD2)
Protocol
dCAPS


Tobacco N. acuminata

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38766)
Chromosome
5
Position
76.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41689
Forward primer (5'-3')
TTGAGGTTGCATTTGCTCATGGAGT
Accessions and product sizes
Solanum pennellii TA56
150
Solanum lycopersicum TA209
150
Approximate temperature
55°C
Reverse primer (5'-3')
TTCTCAGAGGAAGGGTTACAGGATAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 27080)
Chromosome
5
Position
2.91 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At5g09380  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8625 marker 8625
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