Sol Genomics Network

SGN Marker C2_At5g11480

SGN-M8650
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	309692 (SGN) 129388 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U226270	-	-	-
Solanum tuberosum	Single	SGN-U251349	-	-	-
Arabidopsis	Single	At5g11480 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46749)
Chromosome 8
Position 35.40 cM
Confidence I(LOD2)
Protocol dCAPS

Tobacco N. tomentosiformis

Map: Pepper-COSII
Map version 58 (location: 41510)
Chromosome 1
Position 168.40 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43486

Forward primer (5'-3')

TCCTCATAGATGCTAGCATTCCTGC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

ACCTCCAGTCTTTTTCTTTTTCCG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38775)
Chromosome 8
Position 39.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39918

Forward primer (5'-3')

TCCTCATAGATGCTAGCATTCCTGC

Accessions and product sizes

Solanum lycopersicum TA209

400

Solanum pennellii TA56

400

Approximate temperature

55°C

Reverse primer (5'-3')

ACCTCCAGTCTTTTTCTTTTTCCG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

400

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27107)
Chromosome 5
Position 3.67 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11685
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 530	Approximate temperature 55°C

PCR data Exp. ID 11686
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 530	Approximate temperature 55°C

PCR data Exp. ID 11687
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 530	Approximate temperature 55°C

PCR data Exp. ID 13678
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 580	Approximate temperature 55°C

PCR data Exp. ID 13679
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 580	Approximate temperature 55°C

PCR data Exp. ID 13680
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 13681
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580	Approximate temperature 55°C

PCR data Exp. ID 13682
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580	Approximate temperature 55°C

PCR data Exp. ID 13683
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 580	Approximate temperature 55°C

PCR data Exp. ID 13684
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 550	Approximate temperature 55°C

PCR data Exp. ID 13685
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 550	Approximate temperature 55°C

PCR data Exp. ID 13686
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 580	Approximate temperature 55°C

PCR data Exp. ID 32652
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 580	Approximate temperature 55°C

PCR data Exp. ID 33189
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 580	Approximate temperature 55°C

PCR data Exp. ID 33190
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 580	Approximate temperature 55°C

PCR data Exp. ID 33191
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 580	Approximate temperature 55°C

PCR data Exp. ID 33192
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 580	Approximate temperature 55°C

PCR data Exp. ID 33193
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 580	Approximate temperature 55°C

PCR data Exp. ID 11688
Forward primer (5'-3') TCCTCATAGATGCTAGCATTCCTGC	Digested band sizes (using DpnII) Solanum pennellii LA716: 220 Solanum lycopersicum LA925: 380	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACCTCCAGTCTTTTTCTTTTTCCG	Enzymes All possible enzymes for pennellii and and lycopersicum: DpnII
Accessions and product sizes Solanum pennellii LA716: 530 Solanum lycopersicum LA925: 530	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U226270

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At5g11480

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8650 marker 8650

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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