Sol Genomics Network

SGN Marker C2_At5g20520

SGN-M8782
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	308094 (SGN) 130635 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U203982	-	-	-
Lycopersicon Combined	Multiple	SGN-U217973	-	-	-
Solanum tuberosum	Single	SGN-U249811	-	-	-
Arabidopsis	Single	At5g20520 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41522)
Chromosome 7
Position 52.10 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43498

Forward primer (5'-3')

TCTTACCAAAAACAATCCTGACAAGG

Accessions and product sizes

Approximate temperature

60°C

Reverse primer (5'-3')

AGTATTCTCCAAAATGAGCCCAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38809)
Chromosome 7
Position 22.30 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 41741

Forward primer (5'-3')

TAGTTCAGAGGACCGATATTGACACATC

Accessions and product sizes

Approximate temperature

Unknown

Reverse primer (5'-3')

AAAGTATTCTCCAAAATGAGCCCAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27242)
Chromosome 5
Position 6.94 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11775
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1400	Approximate temperature 55°C

PCR data Exp. ID 11776
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1400	Approximate temperature 55°C

PCR data Exp. ID 11777
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1400	Approximate temperature 55°C

PCR data Exp. ID 13761
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1400	Approximate temperature 55°C

PCR data Exp. ID 13762
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 500	Approximate temperature 55°C

PCR data Exp. ID 13763
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1350	Approximate temperature 55°C

PCR data Exp. ID 13764
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 13765
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 500	Approximate temperature 55°C

PCR data Exp. ID 13766
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1350	Approximate temperature 55°C

PCR data Exp. ID 13767
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1300	Approximate temperature 55°C

PCR data Exp. ID 13768
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 1300	Approximate temperature 55°C

PCR data Exp. ID 13769
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Physalis TA1367: 1400	Approximate temperature 55°C

PCR data Exp. ID 13770
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 1550	Approximate temperature 55°C

PCR data Exp. ID 13771
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1600+1350	Approximate temperature 55°C

PCR data Exp. ID 13772
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1600	Approximate temperature 55°C

PCR data Exp. ID 13773
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Coffea canephora BP409: 1100	Approximate temperature 55°C

PCR data Exp. ID 33224
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 33225
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 500	Approximate temperature 55°C

PCR data Exp. ID 33226
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1350	Approximate temperature 55°C

PCR data Exp. ID 33227
Forward primer (5'-3') TCTTACCAAAAACAATCCTGACAAGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGTATTCTCCAAAATGAGCCCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1300	Approximate temperature 55°C