Sol Genomics Network

SGN Marker C2_At5g22350

SGN-M8797
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303548 (SGN) 121145 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U216816	-	-	-
Solanum tuberosum	Single	SGN-U248674	-	-	-
Arabidopsis	Single	At5g22350 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 27258)
Chromosome 5
Position 7.40 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41746

Forward primer (5'-3')

ATGGGGCATCTGGCTTGGGC

Accessions and product sizes

Solanum lycopersicum TA209

530

Solanum pennellii TA56

530

Approximate temperature

55°C

Reverse primer (5'-3')

AGCGGAGGGTAACTCCAGCTTTC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

380

Solanum pennellii TA56

220

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11789
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1500	Approximate temperature 55°C

PCR data Exp. ID 11790
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1500	Approximate temperature 55°C

PCR data Exp. ID 11791
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1500	Approximate temperature 55°C

PCR data Exp. ID 13782
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1300	Approximate temperature 55°C

PCR data Exp. ID 13783
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1600	Approximate temperature 55°C

PCR data Exp. ID 13784
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1200	Approximate temperature 55°C

PCR data Exp. ID 13785
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 1200	Approximate temperature 55°C

PCR data Exp. ID 13786
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Physalis TA1367: 1200	Approximate temperature 55°C

PCR data Exp. ID 13787
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 650	Approximate temperature 55°C

PCR data Exp. ID 13788
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 650	Approximate temperature 55°C

PCR data Exp. ID 13789
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 650	Approximate temperature 55°C

PCR data Exp. ID 33232
Forward primer (5'-3') ATGGGGCATCTGGCTTGGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCGGAGGGTAACTCCAGCTTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1200	Approximate temperature 55°C

Universal primers for Asterid species

No additional PCR data found.

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At5g22350

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8797 marker 8797

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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