SGN Marker C2_At5g25900

SGN-M8844
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309848 (SGN)
127300 (CGN)		---
Lycopersicon CombinedSingleSGN-U228314---
ArabidopsisSingleAt5g25900 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46762)
Chromosome
4
Position
75.60 cM
Confidence
F(LOD3)
Protocol
PCR


Tobacco N. tomentosiformis

Map: Pepper-COSII   
Map version
58 (location: 41527)
Chromosome
4
Position
136.50 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43503
Forward primer (5'-3')
CTTTTGTGTTTCAGTTACCGCAAT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38829)
Chromosome
4
Position
108.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39950
Forward primer (5'-3')
TGCTAATTGGGCTGAAACTTATGG
Accessions and product sizes
Solanum pennellii TA56
150
Solanum lycopersicum TA209
150
Approximate temperature
55°C
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 27306)
Chromosome
5
Position
9.04 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 11823
Forward primer (5'-3')
TGCTAATTGGGCTGAAACTTATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1350
 Approximate temperature
55°C
  
PCR data   Exp. ID 11824
Forward primer (5'-3')
TGCTAATTGGGCTGAAACTTATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1400
 Approximate temperature
55°C
  
PCR data   Exp. ID 11825
Forward primer (5'-3')
TGCTAATTGGGCTGAAACTTATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1350
 Approximate temperature
55°C
  
PCR data   Exp. ID 11826
Forward primer (5'-3')
TGCTAATTGGGCTGAAACTTATGG
Digested band sizes (using amplicon difference)
Solanum pennellii LA716: 1350
Solanum lycopersicum LA925: 1400
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTTAGCTTTCTAGTTGAGATGGATG
Enzymes
All possible enzymes for pennellii and and lycopersicum: amplicon difference
   
Accessions and product sizes
Solanum lycopersicum LA925: 1400
Solanum pennellii LA716: 1350
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g25900  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8844 marker 8844
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