SGN Marker C2_At5g32450

SGN-M8870
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302668 (SGN)
122816 (CGN)		---
Lycopersicon CombinedSingleSGN-U216286---
Solanum tuberosumMultipleSGN-U245733---
ArabidopsisSingleAt5g32450 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27333)
Chromosome
5
Position
12.10 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41782
Forward primer (5'-3')
TGAGAGAGAGGTTCGCGAGTTCTTC
Accessions and product sizes
Solanum lycopersicum TA209
1400
Solanum pennellii TA56
1400
Approximate temperature
55°C
Reverse primer (5'-3')
TCGGATCTTTAAATGTAACAAAGGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11847
Forward primer (5'-3')
TGAGAGAGAGGTTCGCGAGTTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGGATCTTTAAATGTAACAAAGGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11848
Forward primer (5'-3')
TGAGAGAGAGGTTCGCGAGTTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGGATCTTTAAATGTAACAAAGGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11849
Forward primer (5'-3')
TGAGAGAGAGGTTCGCGAGTTCTTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGGATCTTTAAATGTAACAAAGGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U216286
SGN-U278782
SGN-U278784
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At5g32450  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8870 marker 8870
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